PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I00179.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MIKC_MADS
Protein Properties Length: 226aa    MW: 25866.8 Da    PI: 9.5102
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I00179.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.78.5e-30959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien + rqvtfskRrng+lKKA+ELSvLCdaeva+++fs++gklye++s
  Pahal.I00179.1  9 KRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALVVFSPRGKLYEFAS 59
                    79***********************************************86 PP

2K-box68.42.4e-2379171799
           K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                     +++ +++ e+ + +++ L k++e L+  +R+llGe+Le++s++eL +Le +Leksl  iR +K++ll eq+++l++ke  l ++n++Lr+k +
  Pahal.I00179.1  79 SKTVQQDIEQVKANAEDLAKKLEALEAYKRKLLGEKLEQCSIEELYSLEVKLEKSLHCIRGRKTQLLEEQVNKLKEKEMTLLKNNEDLREKCK 171
                     3366788999********************************************************************************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.2E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.441161IPR002100Transcription factor, MADS-box
PRINTSPR004047.3E-31323IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.32E-33384IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
CDDcd002654.93E-43375No hitNo description
PfamPF003192.4E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004047.3E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004047.3E-313859IPR002100Transcription factor, MADS-box
PfamPF014863.0E-2483171IPR002487Transcription factor, K-box
PROSITE profilePS5129713.44486176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000060Biological Processprotein import into nucleus, translocation
GO:0009409Biological Processresponse to cold
GO:0009739Biological Processresponse to gibberellin
GO:0009911Biological Processpositive regulation of flower development
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008134Molecular Functiontranscription factor binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MVRGKTQMKR IENPTSRQVT FSKRRNGLLK KAFELSVLCD AEVALVVFSP RGKLYEFASG  60
SVQKTIERYR TYTKDNVSSK TVQQDIEQVK ANAEDLAKKL EALEAYKRKL LGEKLEQCSI  120
EELYSLEVKL EKSLHCIRGR KTQLLEEQVN KLKEKEMTLL KNNEDLREKC KNQPPLPMTP  180
ARPVITVEDD RPEQNVDAMD VETELYIGLP GRDPRRNKVA EVRSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3mu6_A3e-19372271Myocyte-specific enhancer factor 2A
3mu6_B3e-19372271Myocyte-specific enhancer factor 2A
3mu6_C3e-19372271Myocyte-specific enhancer factor 2A
3mu6_D3e-19372271Myocyte-specific enhancer factor 2A
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00076ChIP-chipTransfer from AT2G45660Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9607740.0EU960774.1 Zea mays clone 228490 MADS-box transcription factor 56 mRNA, complete cds.
GenBankEU9625040.0EU962504.1 Zea mays clone 243238 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985919.11e-146PREDICTED: MADS-box transcription factor 50 isoform X2
RefseqXP_004985920.11e-146PREDICTED: MADS-box transcription factor 50 isoform X2
RefseqXP_012698462.11e-146PREDICTED: MADS-box transcription factor 50 isoform X2
SwissprotQ9XJ601e-120MAD50_ORYSJ; MADS-box transcription factor 50
TrEMBLQ9FR851e-128Q9FR85_MAIZE; M5 protein
STRINGGRMZM2G171365_P011e-128(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP14133379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.11e-75AGAMOUS-like 20